Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
ConceptMap Genomic Sample Preparation
| Usage |
|---|
ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure |
HTML View
to http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20
| Source | Equivalence | Target | Comment |
|---|---|---|---|
| CD138+ (CD138+) | equivalent | 798001000000102 (CD138 count) | |
| CD15+ (CD15+) | equivalent | 785421000000106 (CD15 count) | |
| CD19+ (CD19+) | equivalent | 408228002 (Absolute CD19 count) | |
| CD3+ (CD3+) | equivalent | 313447006 (Absolute CD3 count procedure) | |
| CD34+ (CD34+) | equivalent | 313505009 (CD34 stem cell count procedure) | |
| CD5+ (CD5+) | equivalent | 413790005 (CD5 count) | |
| DNA (DNA) | equivalent | 702943006 (DNA extraction) | |
| microdissection (Microdissection) | equivalent | 787995009 (Microdissection of tissue specimen) | |
| other (Other) | wider | 71388002 (Procedure) | Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text. |
| plasma (Plasma) | equivalent | 407663004 (Percentage plasma cell count) | |
| RNA (RNA) | equivalent | 702944000 (RNA extraction) | |
| white-cells (White Cells) | equivalent | 302560003 (Determination of percentage differential white blood cells) |
Table View
| ConceptMap.id[0] | genomics-samplepreparation |
| ConceptMap.url[0] | https://fhir.nhs.uk/ConceptMap/genomics-samplepreparation |
| ConceptMap.version[0] | 0.1.0 |
| ConceptMap.name[0] | GenomicsSamplePreparation |
| ConceptMap.title[0] | Genomics Sample Preparation |
| ConceptMap.status[0] | draft |
| ConceptMap.date[0] | 2025-09-05T11:00:00.000Z |
| ConceptMap.publisher[0] | NHS England |
| ConceptMap.contact[0].name[0] | NHS England |
| ConceptMap.contact[0].telecom[0].system[0] | |
| ConceptMap.contact[0].telecom[0].value[0] | interoperabilityteam@nhs.net |
| ConceptMap.description[0] | A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec. |
| ConceptMap.purpose[0] | ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure |
| ConceptMap.copyright[0] | Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html. |
| ConceptMap.target[0] | http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20 |
| ConceptMap.group[0].source[0] | https://future.nhs.uk/NHSgenomics/view?objectId=222250117 |
| ConceptMap.group[0].target[0] | http://snomed.info/sct |
| ConceptMap.group[0].element[0].code[0] | CD138+ |
| ConceptMap.group[0].element[0].display[0] | CD138+ |
| ConceptMap.group[0].element[0].target[0].code[0] | 798001000000102 |
| ConceptMap.group[0].element[0].target[0].display[0] | CD138 count |
| ConceptMap.group[0].element[0].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[1].code[0] | CD15+ |
| ConceptMap.group[0].element[1].display[0] | CD15+ |
| ConceptMap.group[0].element[1].target[0].code[0] | 785421000000106 |
| ConceptMap.group[0].element[1].target[0].display[0] | CD15 count |
| ConceptMap.group[0].element[1].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[2].code[0] | CD19+ |
| ConceptMap.group[0].element[2].display[0] | CD19+ |
| ConceptMap.group[0].element[2].target[0].code[0] | 408228002 |
| ConceptMap.group[0].element[2].target[0].display[0] | Absolute CD19 count |
| ConceptMap.group[0].element[2].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[3].code[0] | CD3+ |
| ConceptMap.group[0].element[3].display[0] | CD3+ |
| ConceptMap.group[0].element[3].target[0].code[0] | 313447006 |
| ConceptMap.group[0].element[3].target[0].display[0] | Absolute CD3 count procedure |
| ConceptMap.group[0].element[3].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[4].code[0] | CD34+ |
| ConceptMap.group[0].element[4].display[0] | CD34+ |
| ConceptMap.group[0].element[4].target[0].code[0] | 313505009 |
| ConceptMap.group[0].element[4].target[0].display[0] | CD34 stem cell count procedure |
| ConceptMap.group[0].element[4].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[5].code[0] | CD5+ |
| ConceptMap.group[0].element[5].display[0] | CD5+ |
| ConceptMap.group[0].element[5].target[0].code[0] | 413790005 |
| ConceptMap.group[0].element[5].target[0].display[0] | CD5 count |
| ConceptMap.group[0].element[5].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[6].code[0] | DNA |
| ConceptMap.group[0].element[6].display[0] | DNA |
| ConceptMap.group[0].element[6].target[0].code[0] | 702943006 |
| ConceptMap.group[0].element[6].target[0].display[0] | DNA extraction |
| ConceptMap.group[0].element[6].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[7].code[0] | microdissection |
| ConceptMap.group[0].element[7].display[0] | Microdissection |
| ConceptMap.group[0].element[7].target[0].code[0] | 787995009 |
| ConceptMap.group[0].element[7].target[0].display[0] | Microdissection of tissue specimen |
| ConceptMap.group[0].element[7].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[8].code[0] | other |
| ConceptMap.group[0].element[8].display[0] | Other |
| ConceptMap.group[0].element[8].target[0].code[0] | 71388002 |
| ConceptMap.group[0].element[8].target[0].display[0] | Procedure |
| ConceptMap.group[0].element[8].target[0].equivalence[0] | wider |
| ConceptMap.group[0].element[8].target[0].comment[0] | Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text. |
| ConceptMap.group[0].element[9].code[0] | plasma |
| ConceptMap.group[0].element[9].display[0] | Plasma |
| ConceptMap.group[0].element[9].target[0].code[0] | 407663004 |
| ConceptMap.group[0].element[9].target[0].display[0] | Percentage plasma cell count |
| ConceptMap.group[0].element[9].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[10].code[0] | RNA |
| ConceptMap.group[0].element[10].display[0] | RNA |
| ConceptMap.group[0].element[10].target[0].code[0] | 702944000 |
| ConceptMap.group[0].element[10].target[0].display[0] | RNA extraction |
| ConceptMap.group[0].element[10].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[11].code[0] | white-cells |
| ConceptMap.group[0].element[11].display[0] | White Cells |
| ConceptMap.group[0].element[11].target[0].code[0] | 302560003 |
| ConceptMap.group[0].element[11].target[0].display[0] | Determination of percentage differential white blood cells |
| ConceptMap.group[0].element[11].target[0].equivalence[0] | equivalent |
XML View
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
</target>
</element>
</target>
</element>
</target>
</element>
</target>
</element>
</target>
</element>
</target>
</element>
</target>
</element>
</target>
</element>
<comment value="Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text." />
</target>
</element>
</target>
</element>
</target>
</element>
</target>
</element>
</group>
</ConceptMap>
JSON View
{
{
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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