Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
CodeSystem Genomic Primary Sample State
Usage
A CodeSystem to record the categorisation of a specimen, either sourced from a Tumour or Germline.
HTML View
Concepts
This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState defines the following codes:
Table View
| CodeSystem.id[0] | UKCore-PrimarySampleState |
| CodeSystem.url[0] | https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState |
| CodeSystem.version[0] | 2.0.0 |
| CodeSystem.name[0] | UKCorePrimarySampleState |
| CodeSystem.title[0] | UK Core Primary Sample State |
| CodeSystem.status[0] | active |
| CodeSystem.date[0] | 2024-11-08 |
| CodeSystem.publisher[0] | HL7 UK |
| CodeSystem.contact[0].name[0] | HL7 UK |
| CodeSystem.contact[0].telecom[0].system[0] | |
| CodeSystem.contact[0].telecom[0].value[0] | ukcore@hl7.org.uk |
| CodeSystem.contact[0].telecom[0].use[0] | work |
| CodeSystem.contact[0].telecom[0].rank[0] | 1 |
| CodeSystem.description[0] | A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets. |
| CodeSystem.copyright[0] | Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html. |
| CodeSystem.caseSensitive[0] | True |
| CodeSystem.content[0] | complete |
| CodeSystem.concept[0].code[0] | blood-spot |
| CodeSystem.concept[0].display[0] | Blood spot |
| CodeSystem.concept[1].code[0] | FFPE |
| CodeSystem.concept[1].display[0] | Formalin-fixed paraffin-embedded |
| CodeSystem.concept[2].code[0] | fresh |
| CodeSystem.concept[2].display[0] | Fresh |
| CodeSystem.concept[3].code[0] | other |
| CodeSystem.concept[3].display[0] | Other |
| CodeSystem.concept[3].definition[0] | Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text. |
XML View
</telecom>
</contact>
<description value="A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
</concept>
</concept>
</concept>
<definition value="Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text." />
</concept>
</CodeSystem>
JSON View
{
{
]
}
],
"description": "A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
{
},
{
},
{
},
{
"definition": "Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text."
}
]
}